Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines. MUpro 1.1: Prediction of Stability Changes (delta delta G) of Single Site Mutations from Protein Sequencesĭownload MUpro 1.1 source code and executable (200K, Linux version) | Installation instructions | Access MUpro server | MUpro dataset (1615 mutations) | MUpro dataset (388 mutations) EVALpro 1.0: software package to evaluate the accuracy of a profile-based predictorĪs a function of the max cosine similarity between training and test profiles.ĭownload EVALpro 1.0 source code and examples (44 MB, Linux/Mac version) | Installation instructions & Documentationģ. SCRATCH: a Protein Structure and Structural Feature Prediction Server. SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity.īioinformatics, vol 30 (18), 2592-2597. SSpro and ACCpro version 4.0 (2005) still available here.
SCRATCH-1D release 1.0 (2013, linux version, 1.6 GB).
SCRATCH-1D release 1.1 (2015, linux version, 2.7 GB).SCRATCH-1D release 1.2 (2018, linux version, 6.3 GB).SCRATCH-1D release 1.3 (2020, linux version, 9.4 GB).If you downloaded the package prior to thatĭate, we strongly recommend that you reinstall it. HOMOLpro release 2.0 (2021) : Homology-based secondary structure & solvent accessibility predictionĪ bug in SCRATCH-1D release 2.0, containing SSpro 6.0 and ACCpro 6.0,.PROFILpro release 2.0 (2021) : Protein evolutionary information / sequence profiles.EVALpro release 1.0 (2019) : Evaluation of sequence-based & profile-based predictors.ACCpro20 release 6.0 (2021) : Protein relative solvent accessibility prediction (thresholds 0% to 95%).ACCpro release 6.0 (2021) : Protein relative solvent accessibility prediction (at the 25% threshold).SSpro8 release 6.0 (2021) : Protein secondary structure prediction (8-class).SSpro release 6.0 (2021) : Protein secondary structure prediction (3-class).SCRATCH-1D release 2.0 for Ubuntu (2021, Ubuntu Only, 1.4 GB). The 4 predictors are included in the SCRATCH suite of 1D predictors available for download here: SSpro, SSpro8, ACCpro, ACCpro20 : Protein Secondary StructureĪnd Relative Solvent Accessibility Prediction Institute for Genomics and Bioinformatics.
UCI :: Institute for Genomics and Bioinformatics - Download PageĪll software and related material contained herein can be downloaded freely for academic, non-commercial, research use only.įor any other use, please contact pfbaldi gmail com.Ĭopyright 2005-2021.
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